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A powerful and comprehensive suite of molecular biology and NGS analysis tools NGS Analysis and Genomics De novo assembly or reference mapping of Illumina, PacBio or Ion Torrent reads (any length, paired ends, barcodes), using industry leading algorithms including TopHat and Velvet. Comprehensive analysis of data including genome browser, contig visualization, SNP calling and RNA-Seq expression analysis. Sequence and Chromatogram Analysis Trim, assemble and view Sanger sequencing trace files, correct base calls and create consensus sequences.
Automatic annotation for gene prediction, motifs, translation and variant calling. Genotype microsatellite traces with automated ladder fitting and peak calling and generate tables of alleles. Alignment and Tree Building Perform pairwise and multiple alignments of DNA or protein using trusted algorithms including MAFFT and ClustalW. View and edit alignments with real-time translation and highlighting. Build phylogenetic trees using peer-reviewed algorithms including RAxML and PAUP* and adjust display settings for publication-ready graphics. Searching, Sharing and Automation Batch BLAST against NCBI and directly search GenBank.
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